Publications

2017

Prinzing, Andreas; Ozinga, Wim A.; Brandle, Martin; et al. (2017) Benefits from living together? Clades whose species use similar habitats may persist as a result of eco-evolutionary feedbacks. New Phytologist, 213(1), pp. 66-82. 10.1111/nph.14341

Parisod, Christian (2017) Profiling Transposable Elements and Their Epigenetic Effects in Non-model Species. Methods in molecular biology (Clifton, N.J.), 1456, pp. 243-250 10.1007/978-1-4899-7708-3_19

Choudhury, Rimjhim Roy; Neuhaus, Jean-Marc; Parisod, Christian (2017) Resolving fine-grained dynamics of retrotransposons: comparative analysis of inferential methods and genomic resources. Plant Journal, 90(5), pp. 979-993. 10.1111/tpj.13524

2016

Lafon-Placette, Clement; Vallejo-Marin, Mario; Parisod, Christian; et al. (2016) Current plant speciation research: unravelling the processes and mechanisms behind the evolution of reproductive isolation barriers. New Phytologist, 209(1), pp. 29-33. 10.1111/nph.13756

Senerchia, Natacha; Felber, Francois; North, Beatrice; et al. (2016) Differential introgression and reorganization of retrotransposons in hybrid zones between wild wheats. Molecular Ecology, 25(11), pp. 2518-2528. 10.1111/mec.13515

Geiser, Celine; Mandakova, Terezie; Arrigo, Nils; et al. (2016) Repeated Whole-Genome Duplication, Karyotype Reshuffling, and Biased Retention of Stress-Responding Genes in Buckler Mustard. Plant Cell, 28(1), pp. 17-27. 10.1105/tpc.15.00791

Parisod, Christian; Broennimann, Olivier (2016) Towards unified hypotheses of the impact of polyploidy on ecological niches. New Phytologist, 212(3), pp. 540-542. 10.1111/nph.14133

2015

Bardil, Amelie; Tayale, Alexandre; Parisod, Christian (2015) Evolutionary dynamics of retrotransposons following autopolyploidy in the Buckler Mustard species complex. Plant Journal, 82(4), pp. 621-631. 10.1111/tpj.12837

Senerchia, Natacha; Felber, Francois; Parisod, Christian (2015) Genome reorganization in F-1 hybrids uncovers the role of retrotransposons in reproductive isolation. Proceedings of the Royal Society B-Biological Sciences, 282(1804). 10.1098/rspb.2014.2874

AlKindy, B.; Guyeux, C.; Couchot, J.-F.; et al. (2015) Hybrid genetic algorithm and lasso test approach for inferring well supported phylogenetic trees based on subsets of chloroplastic core genes. Algorithms for Computational Biology. Second International Conference, AlCoB 2015. Proceedings: LNCS 9199, pp. 83-96. 10.1007/978-3-319-21233-3_7

Leempoel, Kevin; Parisod, Christian; Geiser, Celine; et al. (2015) Very high-resolution digital elevationmodels: are multi-scale derived variables ecologically relevant? Methods in Ecology and Evolution, 6(12), pp. 1373-1383. 10.1111/2041-210X.12427

2014

Senerchia, Natacha; Felber, Francois; Parisod, Christian (2014) Contrasting evolutionary trajectories of multiple retrotransposons following independent allopolyploidy in wild wheats. New Phytologist, 202(3), pp. 975-985. 10.1111/nph.12731

Parisod, Christian; Salmon, Armel; Ainouche, Malika; et al. (2014) Detecting Epigenetic Effects of Transposable Elements in Plants. Plant Epigenetics and Epigenomics: Methods and Protocols, 1112, pp. 211-217. 10.1007/978-1-62703-773-0_14

Gustafsson, A. Lovisa S.; Skrede, Inger; Rowe, Heather C.; et al. (2014) Genetics of Cryptic Speciation within an Arctic Mustard, Draba nivalis. Plos One, 9(4). 10.1371/journal.pone.0093834

Babst-Kostecka, Alicja A.; Parisod, Christian; Gode, Cecile; et al. (2014) Patterns of genetic divergence among populations of the pseudometallophyte Biscutella laevigata from southern Poland. Plant and Soil, 383(1-2), pp. 245-256. 10.1007/s11104-014-2171-0

Pajkovic, Mila; Lappe, Sylvain; Barman, Rachel; et al. (2014) Wheat alleles introgress into selfing wild relatives: empirical estimates from approximate Bayesian computation in Aegilops triuncialis. Molecular Ecology, 23(20), pp. 5089-5101. 10.1111/mec.12918

2013

Senerchia, Natacha; Wicker, Thomas; Felber, Francois; et al. (2013) Evolutionary Dynamics of Retrotransposons Assessed by High-Throughput Sequencing in Wild Relatives of Wheat. Genome Biology and Evolution, 5(5), pp. 1010-1020. 10.1093/gbe/evt064

Parisod, C.; Definod, C.; Sarr, A.; et al. (2013) Genome-specific introgression between wheat and its wild relative Aegilops triuncialis. Journal of Evolutionary Biology, 26(1), pp. 223-228. 10.1111/jeb.12040

Abbott, R.; Albach, D.; Ansell, S.; et al. (2013) Hybridization and speciation. Journal of Evolutionary Biology, 26(2), pp. 229-246. 10.1111/j.1420-9101.2012.02599.x

Tayale, A.; Parisod, C. (2013) Natural Pathways to Polyploidy in Plants and Consequences for Genome Reorganization. Cytogenetic and Genome Research, 140(2-4), pp. 79-96. 10.1159/000351318

Bonchev, Georgi; Parisod, Christian (2013) Transposable elements and microevolutionary changes in natural populations. Molecular Ecology Resources, 13(5), pp. 765-775. 10.1111/1755-0998.12133

2012

Parisod, Christian; Holderegger, Rolf (2012) Adaptive landscape genetics: pitfalls and benefits. Molecular Ecology, 21(15), pp. 3644-3646. 10.1111/j.1365-294X.2012.05675.x

Parisod, Christian; Senerchia, Natacha (2012) Responses of Transposable Elements to Polyploidy. In: Grandbastien, Marie-Angèle; Casacuberta, Josep M. (eds.) Plant Transposable Elements -  Impact on Genome Structure and Function. Topics in Current Genetics: Vol. 24 (pp. 147-168) Springer 10.1007/978-3-642-31842-9_9

Parisod, Christian; Mhiri, Corinne; Lim, K Yoong; et al. (2012) Differential dynamics of transposable elements during long-term diploidization of Nicotiana section Repandae (Solanaceae) allopolyploid genomes. PloS one, 7(11), pp. e50352. 10.1371/journal.pone.0050352

Parisod, Christian (2012) Polyploids integrate genomic changes and ecological shifts. New Phytologist, 193(2), pp. 297-300. 10.1111/j.1469-8137.2011.04008.x

2011

Arrigo, Nils; Guadagnuolo, Roberto; Lappe, Sylvain; et al. (2011) Gene flow between wheat and wild relatives: empirical evidence from Aegilops geniculata, Ae. neglecta and Ae. triuncialis. Evolutionary Applications, 4(5), pp. 685-695. 10.1111/j.1752-4571.2011.00191.x

Holderegger, Rolf; Thiel-Egenter, Conny; Parisod, Christian (2011) Marie Brockmann-Jerosch and her influence on Alpine phylogeography. Alpine Botany, 121(1), pp. 5-10. 10.1007/s00035-010-0086-9

Leempoel, Kevin, Stucki, Sylvie; Parisod, Christian; Joost Stéphane (2011) Very high resolution digital elevation models (VHR DEMs) and multiscale landscape genomics analysis applied to an alpine plant species. Sigspatial Special, 3(39), pp. 10-14. 10.1145/2078296.2078299

2010

Antonelli, A; Verola, CF; Parisod, C; et al. (2010) Climate cooling promoted the expansion and radiation of a threatened group of South American orchids (Epidendroideae: Laeliinae). Biological Journal of the Linnean Society, 100(3), pp. 597-607. 10.1111/j.1095-8312.2010.01438.x

Parisod, C; Joost, S (2010) Divergent selection in trailing- versus leading-edge populations of Biscutella laevigata. Annals of Botany, 105(4), pp. 655-660. 10.1093/aob/mcq014

Lira-Medeiros, Catarina Fonseca; Parisod, Christian; Fernandes, Ricardo Avancini; et al. (2010) Epigenetic variation in mangrove plants occurring in contrasting natural environment. PloS one, 5(4), pp. e10326.

Parisod, C; Holderegger, R; Brochmann, C (2010) Evolutionary consequences of autopolyploidy. New Phytologist, 186(1), pp. 5-17. 10.1111/j.1469-8137.2009.03142.x

Parisod, C; Alix, K; Just, J; et al. (2010) Impact of transposable elements on the organization and function of allopolyploid genomes. New Phytologist, 186(1), pp. 37-45. 10.1111/j.1469-8137.2009.03096.x

Arrigo, N; Felber, F; Parisod, C; et al. (2010) Origin and expansion of the allotetraploid Aegilops geniculata, a wild relative of wheat. New Phytologist, 187(4), pp. 1170-1180. 10.1111/j.1469-8137.2010.03328.x

Parisod, C; Wipf, S; Gusewell, S (2010) Plant and vegetation responses to a changing environment: an alpine issue. Botanica Helvetica, 120(2), pp. 83-84. 10.1007/s00035-010-0082-0

2009

AINOUCHE, ML; FORTUNE, PM; SALMON, A; et al. (2009) Hybridization, polyploidy and invasion: lessons from Spartina (Poaceae). BIOLOGICAL INVASIONS, 11(5), pp. 1159-1173. 10.1007/s10530-008-9383-2

PARISOD, C; SALMON, A; ZERJAL, T; et al. (2009) Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina. NEW PHYTOLOGIST, 184(4), pp. 1003-1015. 10.1111/j.1469-8137.2009.03029.x

2008

PARISOD, C; BONVIN, G (2008) Fine-scale genetic structure and marginal processes in an expanding population of Biscutella laevigata L. (Brassicaceae). HEREDITY, 101(6), pp. 536-542. 10.1038/hdy.2008.95

PARISOD, C; CHRISTIN, PA (2008) Genome-wide association to fine-scale ecological heterogeneity within a continuous population of Biscutella laevigata (Brassicaceae). NEW PHYTOLOGIST, 178(2), pp. 436-447. 10.1111/j.1469-8137.2007.02361.x

PARISOD, C (2008) Postglacial recolonisation of plants in the western Alps of Switzerland. BOTANICA HELVETICA, 118(1), pp. 1-12. 10.1007/s00035-008-0825-3

2007

PARISOD, C; BESNARD, G (2007) Glacial in situ survival in the Western Alps and polytopic autopolyploidy in Biscutella laevigata L. (Brassicaceae). MOLECULAR ECOLOGY, 16(13), pp. 2755-2767. 10.1111/j.1365-294X.2007.03315.x

2005

PARISOD, C; TRIPPI, C; GALLAND, N (2005) Genetic variability and founder effect in the pitcher plant Sarracenia purpurea (Sarraceniaceae) in populations introduced into Switzerland: From inbreeding to invasion. ANNALS OF BOTANY, 95(2), pp. 277-286. 10.1093/aob/mci023

Jump to: 2017

2017

Choudhury, Rimjhim Roy; Parisod, Christian (2017). Jumping genes: Genomic ballast or powerhouse of biological diversification. Molecular Ecology, 26(18), pp. 4587-4590. Wiley-Blackwell 10.1111/mec.14247